Time
Course name
Course code
Module
Activity
Room, Location
Map link
Staff
Public comment
w7 Thu 2023-02-16 w7
09:00 - 09:45 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Roll-call/Introduction		 6A R1 Astrid Fagraeus hörsal Map Vicky Shingler Schedule may be subject to change

Course Leader: Victoria Shingler
vicky.shingler@umu.se

Roll-Call & Introduction to the course
10:00 - 12:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Lecture 6A R1 Astrid Fagraeus hörsal Map Vicky Shingler L1. Bacterial transcriptional regulation I
13:00 - 13:30 Gene Expression
Gene Expression		 5MO113
5MO113		 Lecture 6A R1 Astrid Fagraeus hörsal Map Vicky Shingler Introductions to the laboratory course &
Discussion group 1 literature assignment
13:45 - 15:45 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Laboratory session		 6A R1 Astrid Fagraeus hörsal Map David Cisneros Armas Lab safety – reminder lecture hall
Introduction to Lab. 1 & to keeping lab notes (DC)
(Assignments into lab groups)
16:00 - 16:15 Gene Expression
Gene Expression		 5MO113
5MO113		 Information Lab 1: Read the Lab 1 assignment and watch the associated short videos to
familiarise yourself with the techniques of single cell streaking and replica plating.
16:15 - 16:30 Gene Expression
Gene Expression		 5MO113
5MO113		 Information Students: Please tell DC if you do not have your own computer to bring on Friday the 17th so that we can arrange one for you….
  Fri 2023-02-17
08:45 - 09:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Information (Students: bring your computer)
09:00 - 11:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Lecture 6A R1 Astrid Fagraeus hörsal Map Vicky Shingler L2. Bacterial transcriptional regulation II (VS)
12:00 - 17:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Laboratory session		 6K Thymine
6L Uracil		 Map
Map 		David Cisneros Armas Lab. 1: Data analysis (DC)
17:00 - 17:15 Gene Expression
Gene Expression		 5MO113
5MO113		 Information Students: be sure to check your answers to the specific questions and your plots of the data with the course assistants before you leave. It is critical that you have these issues clear.
w8 Mon 2023-02-20 w8
08:45 - 09:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Information (Students, bring your computer if you would like e-documentation of your planning)
09:00 - 11:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Lecture 6A R1 Astrid Fagraeus hörsal Map Vicky Shingler L3. External stimuli and gene regulation: Two-component systems (VS)
12:00 - 13:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Laboratory session		 6K Thymine
6L Uracil		 Map
Map 		David Cisneros Armas Introduction to Labs 2 to Lab 3: (DC)
Note will include information on how to make a flow diagram
13:00 - 17:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Laboratory session		 6K Thymine
6L Uracil		 Map
Map 		David Cisneros Armas Planning of your workflow for Lab 2&3

NOTE! Students: Please get your plan approved before starting your experiments or leaving for private study!
15:30 - 17:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Laboratory session		 6L Röda labbet
6L Röda labbet annex		 Map
Note! Students: Please get your plan approved before starting your experiments or leaving for private study!
Lab. 2 (early bird group start).
  Tue 2023-02-21
08:15 - 08:30 Gene Expression
Gene Expression		 5MO113
5MO113		 Information (Students, bring your computer if you need one)
08:30 - 17:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Laboratory session		 6L Röda labbet
6L Röda labbet annex		 Map
Lab. 2&3 (as in your group approved schedule)
09:00 - 17:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Group work		 6K Thymine
6L Uracil		 Map
Map 		Group theory work (e.g. Lab 2 and 3) and DG1 preparation
  Wed 2023-02-22
08:45 - 09:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Information (Students, bring your computer if you need one)
08:45 - 17:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Laboratory session		 6L Röda labbet
6L Röda labbet annex		 Map
Lab. 2&3 (as in your group approved schedule)
09:00 - 17:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Group work		 6K Thymine
6L Uracil		 Map
Map 		Group theory work (e.g. Lab 2 and 3) and DG1 preparation
  Thu 2023-02-23
08:45 - 09:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Information (Students, bring your computer if you need one)
08:45 - 17:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Laboratory session		 6L Röda labbet
6L Röda labbet annex		 Map
Lab. 2&3 (as in your group approved schedule)
09:00 - 17:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Group work		 6K Thymine
6L Uracil		 Map
Map 		Group theory work (e.g. Lab 2 and 3) and DG1 preparation
22:45 - 23:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Deadline Dead-line for mandatory Discussion group 1 material (upload on Canvas as PDF)
  Fri 2023-02-24
07:45 - 08:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Information (Students, bring your computer if you need one)
08:00 - 11:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Laboratory session		 6L Röda labbet
6L Röda labbet annex		 Map
Lab. 2&3 (as in your group approved schedule) or private study
12:00 - 14:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Lecture 6A R1 Astrid Fagraeus hörsal Map Vicky Shingler L4. Signal sensing, regulatory logic, and synthetic regulatory devices (VS)
w9 Mon 2023-02-27 w9
09:00 - 10:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Laboratory session		 6A R1 Astrid Fagraeus hörsal Map Vicky Shingler Lab round-up (VS)
10:15 - 11:30 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Laboratory session		 6A R1 Astrid Fagraeus hörsal Map David Cisneros Armas How to write up your Lab material (DC)
12:30 - 16:30 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Group work		 6A R1 Astrid Fagraeus hörsal Map Vicky Shingler Discussion group 1 (VS) and Discussion group 2 assignment (VS)
  Tue 2023-02-28
09:00 - 11:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Lecture 6A R1 Astrid Fagraeus hörsal Map Jörgen Johansson L5. Transcriptional termination and attenuation (JJ)
12:30 - 14:30 Gene Expression
Gene Expression		 5MO113
5MO113		 Question time 6K Gamla biblioteket Map David Cisneros Armas Open office for Dry Lab 3: Protein expression data interpretation lab (DC) for anyone who did not manage it during Lab. 2 & 3 incubations and waiting times, or needs some extra help.
  Wed 2023-03-01
09:00 - 11:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Lecture 6A R1 Astrid Fagraeus hörsal Map Jörgen Johansson L6. Regulation of mRNA stability and function (JJ)
12:00 - 14:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Lecture Canvas Gemma Atkinson L7 Bacterial translation and control of protein synthesis (GA)
Flipped classroom. Listen to the powerpoint voice record (see on the Canvas course site) and prepare any questions you have for the lecture debriefing session on Tuesday March 7th.
14:00 - 17:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Independent study Private study (e.g. Discussion group 2 literature assignment; lab reports)
  Thu 2023-03-02
09:00 - 11:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Lecture 6A R1 Astrid Fagraeus hörsal Map Matthew Francis L8. Bacterial protein export systems (MF)
13:00 - 15:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Lecture 6A R1 Astrid Fagraeus hörsal Map Vicky Shingler L9. Global regulation and the “omics” (VS)
16:45 - 17:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Deadline 17.00- Dead-line for mandatory Discussion group 2 material (upload on Canvas as PDF)
  Fri 2023-03-03
09:00 - 11:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Lecture Zoom Vasili Hauryliuk L10. Protein expression systems: bacterial (VH)
12:00 - 14:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Question time 6K Gamla biblioteket Map David Cisneros Armas Open office for Labs 1-2 (DC) for anyone who needs extra help
16:45 - 17:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Deadline Dead-line for mandatory Dry Lab 3 written material (upload on Canvas as PDF)
w10 Mon 2023-03-06 w10
09:00 - 11:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Lecture 6A R1 Astrid Fagraeus hörsal Map Vicky Shingler L11. Eukaryotic transcriptional regulation (VS)
12:00 - 15:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Group work		 6K Thymine
6L Uracil		 Map
Map 		Vicky Shingler Discussion group 2 (VS) and Discussion group 3 assignment (VS)
  Tue 2023-03-07
09:00 - 12:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Lecture Zoom Gemma Atkinson L7 Debriefing session (GA)

L12. The eukaryotic ribosome and regulation of protein synthesis (GA)
(PowerPoint voice record also available on Canvas)
13:00 - 17:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Independent study Private study (e.g. Lab reports and DG3 literature assignment)
  Wed 2023-03-08
08:30 - 12:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Lecture Canvas Martin Gullberg L13. Tool Box for mammalian cells (MG) Flipped classroom
(listen to the powerpoint voice record and prepare any questions you have for the lecture debriefing session on Thursday– script is available if you prefer reading to listening)
22:45 - 23:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Deadline		 23.00- Dead-line for Lab 1 & 2 material to be given/sent to your designated
peer reviewers: e.g.

Students: note you will need a signed assessment form from your Peer assessors to be able to submit your final assignment material!
  Thu 2023-03-09
09:00 - 11:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Lecture 6A R1 Astrid Fagraeus hörsal Map Martin Gullberg L13. Flipped classroom debriefing (MG)
16:45 - 17:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Deadline 17.00- Dead-line for mandatory Discussion group 3 material (upload on Canvas as PDF)
  Fri 2023-03-10
08:00 - 12:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Lecture Canvas Martin Gullberg L14. Protein expression systems: eukaryotic (MG) Flipped classroom
(listen to the powerpoint voice record and prepare any questions you have for the afternoon lecture debriefing session – script is available if you prefer reading to listening)
13:00 - 15:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Lecture 6A R1 Astrid Fagraeus hörsal Map Martin Gullberg L14. Flipped classroom debriefing (MG)
w11 Mon 2023-03-13 w11
09:00 - 11:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Lecture 6A R1 Astrid Fagraeus hörsal Map Johan Henriksson L15. RNASeq & RiboSeq (JH)
12:00 - 16:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Group work		 6K Thymine
6L Uracil		 Map
Map 		Vicky Shingler Discussion group 3 and problem solving class 3 (VS)
  Tue 2023-03-14
09:00 - 09:15 Gene Expression
Gene Expression		 5MO113
5MO113		 Information Students: here is where you should provide your written assessment of others and discuss you mutual assessments of each other’s material. You will need a signed assessment form(s) from your Peers to be able to submit your lab report material!
09:00 - 12:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Mandatory
Laboratory session		 6K Thymine
6L Uracil		 Map
Map 		David Cisneros Armas Lab 1 & 2: Peer Assessment Discussion & correction
  Thu 2023-03-16
16:45 - 17:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Deadline Dead-line for mandatory Lab 1 and 2 material after corrections.
Remember to upload both your material AND signed peer review form(s) on Canvas
  Fri 2023-03-17
09:00 - 12:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Question time 6A R1 Astrid Fagraeus hörsal Map Vicky Shingler Course Question and Answer session (VS)
& course evaluation
w12 Mon 2023-03-20 w12
09:00 - 11:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Question time Vicky Shingler Open office (VS) for anyone to ask questions (in person or zoom – not e-mail)
14:00 - 16:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Question time Vicky Shingler Open office (VS) for anyone to ask questions (in person or zoom – not e-mail)
  Tue 2023-03-21
09:00 - 13:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Examination Papperstentamen U Aula Nordica Map Raiyan Ibrahim Aula nordica
w19 Sat 2023-05-13 w19
08:00 - 12:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Examination Papperstentamen
Omtentamen		 ÖP Skrivsal 1 Map Raiyan Ibrahim
w34 Fri 2023-08-25 w34
08:00 - 12:00 Gene Expression
Gene Expression		 5MO113
5MO113		 Omtentamen, papper
Omtentamen		 ÖP Skrivsal 1 Map Lina Helgesson
 
Course codeCourse name, Event code
5MO113Gene Expression, 51541vt23
5MO113Gene Expression, A5161vt23