Time |
Course |
Activity |
Room, Location Comment |
Teacher, External teacher |
Title, Public comment, URL |
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| w3 | Mon 2023-01-16 w3 | ||||||||||||||||||||||||||||
| 10:30 - 12:00 | BIOR25 | Compulsory, Introduction | Heden (G110) | Helena Westerdahl, Staffan Bensch | Introduction and presentation | ||||||||||||||||||||||||
| 13:00 - 14:00 | BIOR25 | Lecture | Hörsal Blå hallen | Staffan Bensch | Introduction to Molecular Ecology | ||||||||||||||||||||||||
| 14:15 - 15:15 | BIOR25 | Lecture | Hörsal Blå hallen | Helena Westerdahl | Transcription and translation | ||||||||||||||||||||||||
| 15:45 - 16:45 | BIOR25 | Lecture | Hörsal Blå hallen | Erica Winslott, Helena Westerdahl, Jane Jönsson, Qinyang Li, Simon Jacobsen Ellerstrand, Staffan Bensch, Staffan Nilsson | Introduction to BarCoding | ||||||||||||||||||||||||
| Tue 2023-01-17 | |||||||||||||||||||||||||||||
| 09:00 - 13:00 | BIOR25 | Laboratory session, Excursion, Compulsory, Teaching | Krypt - Raggmossan (T109) | Helena Westerdahl, Mikael Sörensson, Staffan Bensch, Staffan Nilsson | |||||||||||||||||||||||||
| 09:00 - 12:00 | BIOR25 | Laboratory session, Excursion, Compulsory | Heden (G110), Ängen (G111) | Helena Westerdahl, Mikael Sörensson, Staffan Bensch, Staffan Nilsson | Collection of DNA from wild organisms, start DNA extraction | ||||||||||||||||||||||||
| 13:00 - 18:00 | BIOR25 | Laboratory session, Compulsory | Heden (G110), Ängen (G111) | Erica Winslott, Qinyang Li, Simon Jacobsen Ellerstrand, Staffan Nilsson | DNA extraction | ||||||||||||||||||||||||
| Wed 2023-01-18 | |||||||||||||||||||||||||||||
| 08:00 - 12:00 | BIOR25 | Laboratory session, Compulsory | Heden (G110), Ängen (G111) | Erica Winslott, Qinyang Li, Simon Jacobsen Ellerstrand, Staffan Nilsson | DNA extraction continued | ||||||||||||||||||||||||
| 13:00 - 17:00 | BIOR25 | Laboratory session, Compulsory | Heden (G110), Ängen (G111) | Erica Winslott, Qinyang Li, Simon Jacobsen Ellerstrand, Staffan Nilsson | DNA quantification & dillution | ||||||||||||||||||||||||
| Thu 2023-01-19 | |||||||||||||||||||||||||||||
| 08:30 - 12:00 | BIOR25 | Laboratory session, Compulsory | Heden (G110), Ängen (G111) | Erica Winslott, Qinyang Li, Simon Jacobsen Ellerstrand, Staffan Nilsson | Set up PCR | ||||||||||||||||||||||||
| 13:30 - 14:30 | BIOR25 | Lecture | Mossen Väster (B140), Mossen Öster (B141) | Helena Westerdahl | Basic PCR and Sequencing | ||||||||||||||||||||||||
| 15:00 - 17:00 | BIOR25 | Seminar, Compulsory | Mossen Väster (B140), Mossen Öster (B141) | Alex Lawrence, Sofie Nilén | Chapter 2 & 3 (Molecular Biology and tools for ecologists) | ||||||||||||||||||||||||
| Fri 2023-01-20 | |||||||||||||||||||||||||||||
| 08:30 - 12:00 | BIOR25 | Laboratory session, Compulsory | Heden (G110), Ängen (G111) | Erica Winslott, Qinyang Li, Simon Jacobsen Ellerstrand, Staffan Nilsson | PCR products on minigels, precipitate PCR | ||||||||||||||||||||||||
| 13:30 - 17:30 | BIOR25 | Laboratory session, Compulsory | Heden (G110), Ängen (G111) | Erica Winslott, Qinyang Li, Simon Jacobsen Ellerstrand, Staffan Nilsson | PCR for sequencing reaction | ||||||||||||||||||||||||
| w4 | Mon 2023-01-23 w4 | ||||||||||||||||||||||||||||
| 08:30 - 09:30 | BIOR25 | Lecture | Heden (G110) | Staffan Bensch | Sequence analyses & phylogenetic trees 1 | ||||||||||||||||||||||||
| 10:00 - 12:00 | BIOR25 | Laboratory session, Compulsory | Heden (G110) | Staffan Bensch | Internet-based sequence analyses | ||||||||||||||||||||||||
| Tue 2023-01-24 | |||||||||||||||||||||||||||||
| 09:00 - 11:15 | BIOR25 | Laboratory session, Compulsory | Heden (G110) | Staffan Bensch | Alignment Exercise | ||||||||||||||||||||||||
| 12:30 - 13:30 | BIOR25 | Lecture | Heden (G110) | Max Lundberg | Sequence databases | ||||||||||||||||||||||||
| 13:30 - 16:00 | BIOR25 | Laboratory session, Compulsory | Heden (G110) | Max Lundberg | BLAST & ORF | ||||||||||||||||||||||||
| Wed 2023-01-25 | |||||||||||||||||||||||||||||
| 09:00 - 10:30 | BIOR25 | Lecture | Hörsal Röda rummet | Staffan Bensch | Phylogenetic trees 2 | ||||||||||||||||||||||||
| 11:00 - 12:00 | BIOR25 | Lecture | Hörsal Röda rummet | Staffan Bensch | Phylogenetic trees 3 | ||||||||||||||||||||||||
| 13:00 - 15:00 | BIOR25 | Seminar, Compulsory | Heden (G110) | Alex Lawrence, Sofie Nilén | Chapter 4 (Molecular clocks) & Chapter 5 (Single populations) | ||||||||||||||||||||||||
| Thu 2023-01-26 | |||||||||||||||||||||||||||||
| 09:00 - 12:00 | BIOR25 | Laboratory session, Compulsory | Heden (G110) | Staffan Bensch | Editing & aligning obtained sequences | ||||||||||||||||||||||||
| 13:00 - 15:00 | BIOR25 | Compulsory, Information | Hörsal Röda rummet | Information about Master's degree projects. (JÅN, LP), Compulsory information | |||||||||||||||||||||||||
| Fri 2023-01-27 | |||||||||||||||||||||||||||||
| 08:30 - 12:00 | BIOR25 | Laboratory session, Compulsory | Heden (G110) | Staffan Bensch | Neighbor joining and other tree analyses of sequences | ||||||||||||||||||||||||
| 13:00 - 16:00 | BIOR25 | Laboratory session, Compulsory | Heden (G110), Krypt - Raggmossan (T109), Ris - Lingonet (T105), Ris - Ripbäret (T106) | Staffan Bensch | Phylogenetic analyses of obtained sequences | ||||||||||||||||||||||||
| w5 | Mon 2023-01-30 w5 | ||||||||||||||||||||||||||||
| 09:00 - 10:00 | BIOR25 | Lecture | Cerebrum höger (D215b), Cerebrum vänster (D215a) | Helena Westerdahl | Molecular methods | ||||||||||||||||||||||||
| 10:30 - 12:00 | BIOR25 | Lecture | Cerebrum höger (D215b), Cerebrum vänster (D215a) | Niklas Wahlberg | Molecular clocks and dating | ||||||||||||||||||||||||
| 13:00 - 16:00 | BIOR25 | Self-study | Self-study, Prepare for presentation | ||||||||||||||||||||||||||
| Tue 2023-01-31 | |||||||||||||||||||||||||||||
| 09:00 - 12:00 | BIOR25 | Self-study | Self-study, Prepare for presentation | ||||||||||||||||||||||||||
| 13:00 - 16:00 | BIOR25 | Seminar, Compulsory | Kärret Väster (B130), Kärret Öster (B131) | Helena Westerdahl, Staffan Bensch | Presentation projects BarCoding | ||||||||||||||||||||||||
| Wed 2023-02-01 | |||||||||||||||||||||||||||||
| 09:00 - 10:15 | BIOR25 | Lecture | Mossen Väster (B140), Mossen Öster (B141) | Bengt Hansson | Genes in populations I - diversity | ||||||||||||||||||||||||
| 10:30 - 12:00 | BIOR25 | Laboratory session, Compulsory | Mossen Väster (B140), Mossen Öster (B141) | Bengt Hansson | Population structure exercise I - allele data | ||||||||||||||||||||||||
| 13:00 - 16:00 | BIOR25 | Laboratory session, Compulsory | Mossen Väster (B140), Mossen Öster (B141) | Bengt Hansson | Population structure exercise I - allele data | ||||||||||||||||||||||||
| Thu 2023-02-02 | |||||||||||||||||||||||||||||
| 10:00 - 12:00 | BIOR25 | Laboratory session, Compulsory | Mossen Väster (B140), Mossen Öster (B141) | Bengt Hansson, Simon Jacobsen Ellerstrand | Chapter 5 & 6 (Single pop, gene flow, behav ccol) | ||||||||||||||||||||||||
| Fri 2023-02-03 | |||||||||||||||||||||||||||||
| 09:00 - 10:00 | BIOR25 | Lecture | Heden (G110) | Bengt Hansson | Genes in populations II - structure | ||||||||||||||||||||||||
| 10:00 - 11:00 | BIOR25 | Laboratory session, Seminar | Heden (G110) | Bengt Hansson | Population structure exercise II - allele data | ||||||||||||||||||||||||
| 11:00 - 12:00 | BIOR25 | Laboratory session, Compulsory | Heden (G110) | Bengt Hansson | Population structure exercise III - mtDNA data | ||||||||||||||||||||||||
| 13:00 - 15:00 | BIOR25 | Laboratory session, Compulsory | Heden (G110) | Staffan Bensch | Primer design | ||||||||||||||||||||||||
| w6 | Mon 2023-02-06 w6 | ||||||||||||||||||||||||||||
| 09:00 - 11:00 | BIOR25 | Laboratory session, Compulsory | Mossen Väster (B140), Mossen Öster (B141) | Bengt Hansson | Population structure exercise III - mtDNA data | ||||||||||||||||||||||||