| Time | Course | Activity, Lokalbokningsaktivitet | Premises, Location Comment | Staff | Title, Public comment, URL | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| w4 | Mon 2020-01-20 w4 | ||||||||||||||||||||||||||||
| 10:00 - 11:15 | BIOR25 | Compulsory, Introduction | Heden (G110) | Helena Westerdahl, Staffan Bensch | Introduction and presentation | ||||||||||||||||||||||||
| 11:30 - 12:00 | BIOR25 | Compulsory, Excursion | Heden (G110) | Gather equipment and prepare for excursion | |||||||||||||||||||||||||
| 13:00 - 14:00 | BIOR25 | Lecture | Heden (G110) | Staffan Bensch | DNA diagnostics and BarCoding | ||||||||||||||||||||||||
| Tue 2020-01-21 | |||||||||||||||||||||||||||||
| 08:30 - 15:00 | BIOR25 | Compulsory, Excursion | Helena Westerdahl, Mikael Sörensson, Staffan Bensch | Excursion | |||||||||||||||||||||||||
| 15:00 - 16:00 | BIOR25 | Compulsory, Laboratory session | Heden (G110) | David Gomez Blanco, Samantha Mellinger | DNA extraction | ||||||||||||||||||||||||
| Wed 2020-01-22 | |||||||||||||||||||||||||||||
| 08:00 - 12:30 | BIOR25 | Compulsory, Laboratory session | Heden (G110) | David Gomez Blanco, Samantha Mellinger | DNA extraction continued | ||||||||||||||||||||||||
| 13:30 - 14:30 | BIOR25 | Lecture | Heden (G110) | Helena Westerdahl | Basic PCR and Sequencing | ||||||||||||||||||||||||
| 14:30 - 16:30 | BIOR25 | Compulsory, Laboratory session | Heden (G110) | David Gomez Blanco, Samantha Mellinger | DNA extaction continued / set up PCR | ||||||||||||||||||||||||
| Thu 2020-01-23 | |||||||||||||||||||||||||||||
| 09:00 - 10:00 | BIOR25 | Compulsory, Seminar | Ris - Hjortronet (T104), Ris - Kråkbäret (T107), Ris - Lingonet (T105), Ris - Ripbäret (T106) | Aivars Cirulis, Hanna Sigeman | Chapter 3 & 4 (Molecular Biology and tools for ecologists) | ||||||||||||||||||||||||
| 10:30 - 13:00 | BIOR25 | Compulsory, Laboratory session | Heden (G110) | David Gomez Blanco, Samantha Mellinger | DNA extaction continued / set up PCR | ||||||||||||||||||||||||
| 13:00 - 14:30 | BIOR25 | Information | Information om utbytesstudier (på svenska). Tina Ledje. Lokal: Receptorn (D205) i biologihuset. | ||||||||||||||||||||||||||
| Fri 2020-01-24 | |||||||||||||||||||||||||||||
| 08:00 - 12:00 | BIOR25 | Compulsory, Laboratory session | Heden (G110) | David Gomez Blanco, Samantha Mellinger | PCR products on minigels, precipitate PCR | ||||||||||||||||||||||||
| 13:00 - 14:15 | BIOR25 | Lecture | Heden (G110) | Staffan Bensch | Sequence analyses & phylogenetic trees 1 | ||||||||||||||||||||||||
| 14:30 - 16:30 | BIOR25 | Compulsory, Laboratory session | Heden (G110) | David Gomez Blanco, Samantha Mellinger | PCR for sequencing reaction | ||||||||||||||||||||||||
| w5 | Mon 2020-01-27 w5 | ||||||||||||||||||||||||||||
| 09:00 - 11:00 | BIOR25 | Compulsory, Laboratory session | Heden (G110) | Staffan Bensch | Internet-based sequence analyses | ||||||||||||||||||||||||
| 11:15 - 12:00 | BIOR25 | Compulsory, Laboratory session | Heden (G110) | David Gomez Blanco, Samantha Mellinger | PCR continued, precipitate sequencing rxn | ||||||||||||||||||||||||
| 13:00 - 16:30 | BIOR25 | Compulsory, Laboratory session | Heden (G110) | David Gomez Blanco, Samantha Mellinger | Continued, sequence rxn to ABI robot | ||||||||||||||||||||||||
| Tue 2020-01-28 | |||||||||||||||||||||||||||||
| 09:00 - 11:15 | BIOR25 | Compulsory, Laboratory session | Heden (G110) | Anne Duplouy, Staffan Bensch | Alignment Exercise | ||||||||||||||||||||||||
| 12:30 - 13:30 | BIOR25 | Lecture | Heden (G110) | Max Lundberg | Sequence databases | ||||||||||||||||||||||||
| 13:30 - 16:00 | BIOR25 | Compulsory, Laboratory session | Heden (G110) | Helena Westerdahl, Max Lundberg | BLAST & ORF | ||||||||||||||||||||||||
| Wed 2020-01-29 | |||||||||||||||||||||||||||||
| 09:00 - 10:00 | BIOR25 | Lecture | Heden (G110) | Staffan Bensch | Phylogenetic trees 2 | ||||||||||||||||||||||||
| 10:30 - 12:00 | BIOR25 | Compulsory, Seminar | Ris - Hjortronet (T104), Ris - Kråkbäret (T107), Ris - Lingonet (T105), Ris - Ripbäret (T106) | Emily O'Connor, Hanna Sigeman | Chapter 8 (Neutral and adaptive molecular variation) | ||||||||||||||||||||||||
| 13:00 - 14:30 | BIOR25 | Lecture | Heden (G110) | Staffan Bensch | Phylogenetic trees 3 | ||||||||||||||||||||||||
| Thu 2020-01-30 | |||||||||||||||||||||||||||||
| 09:00 - 12:00 | BIOR25 | Compulsory, Laboratory session | Heden (G110), Krypt - Masklaven (T105a), Krypt - Renlaven (T108), Ris - Ripbäret (T106) | Staffan Bensch | Editing & aligning obtained sequences | ||||||||||||||||||||||||
| 13:00 - 15:00 | BIOR25 | Information | Information about Master´s degree projects. Compulsary for Master´s programme students in Biology. Location: heden. Ecology building | ||||||||||||||||||||||||||
| Fri 2020-01-31 | |||||||||||||||||||||||||||||
| 08:30 - 12:00 | BIOR25 | Compulsory, Laboratory session | Heden (G110) | Staffan Bensch | Neighbor joining and other tree analyses of sequences | ||||||||||||||||||||||||
| 13:00 - 16:00 | BIOR25 | Compulsory, Laboratory session | Ris - Hjortronet (T104), Ris - Kråkbäret (T107), Ris - Lingonet (T105), Ris - Ripbäret (T106) | Staffan Bensch | Phylogenetic analyses of obtained sequences | ||||||||||||||||||||||||
| w6 | Mon 2020-02-03 w6 | ||||||||||||||||||||||||||||
| 09:00 - 10:00 | BIOR25 | Lecture | Heden (G110) | Helena Westerdahl | Molecular methods | ||||||||||||||||||||||||
| 10:30 - 12:00 | BIOR25 | Lecture | Heden (G110) | Niklas Wahlberg | Molecular clocks and dating | ||||||||||||||||||||||||
| 13:00 - 16:00 | BIOR25 | Self-study | Ris - Hjortronet (T104), Ris - Kråkbäret (T107), Ris - Lingonet (T105), Ris - Ripbäret (T106) | Prepare for presentation | |||||||||||||||||||||||||
| Tue 2020-02-04 | |||||||||||||||||||||||||||||
| 09:00 - 12:00 | BIOR25 | Self-study | Ris - Hjortronet (T104), Ris - Kråkbäret (T107), Ris - Lingonet (T105), Ris - Ripbäret (T106) | Prepare for presentation | |||||||||||||||||||||||||
| 13:00 - 16:00 | BIOR25 | Compulsory, Seminar | Heden (G110) | Helena Westerdahl, Mikael Sörensson, Staffan Bensch | Presentation projects BarCoding | ||||||||||||||||||||||||
| Wed 2020-02-05 | |||||||||||||||||||||||||||||
| 09:00 - 10:30 | BIOR25 | Lecture | Heden (G110) | Bengt Hansson | Genes in populations I - diversity | ||||||||||||||||||||||||
| 10:30 - 12:00 | BIOR25 | Compulsory, Laboratory session | Heden (G110) | Bengt Hansson | Population structure exercise I - allele data | ||||||||||||||||||||||||
| 13:00 - 16:00 | BIOR25 | Compulsory, Laboratory session | Heden (G110) | Bengt Hansson | Population structure exercise I - allele data | ||||||||||||||||||||||||
| Thu 2020-02-06 | |||||||||||||||||||||||||||||
| 10:30 - 12:00 | BIOR25 | Compulsory, Seminar | Ris - Hjortronet (T104), Ris - Kråkbäret (T107), Ris - Lingonet (T105), Ris - Ripbäret (T106) | Emily O'Connor, Samantha Mellinger | Chapter 7 (Population genetics) | ||||||||||||||||||||||||
| Fri 2020-02-07 | |||||||||||||||||||||||||||||
| 09:00 - 10:00 | BIOR25 | Lecture | Ängen (G111) | Bengt Hansson | Genes in populations II - structure | ||||||||||||||||||||||||
| 10:00 - 11:00 | BIOR25 | Compulsory, Seminar | Ängen (G111) | Bengt Hansson | Population structure exercise II - allele data | ||||||||||||||||||||||||
| 11:00 - 12:00 | BIOR25 | Compulsory, Laboratory session | Ängen (G111) | Bengt Hansson | Population structure exercise III - mtDNA data | ||||||||||||||||||||||||
| 13:00 - 15:00 | BIOR25 | Compulsory, Laboratory session | Ängen (G111) | Staffan Bensch | Primer design | ||||||||||||||||||||||||