Time
Other Information, Comment
Course, Room, Place, URL
Activity, Description, Mandatory
Lecturer, Teacher
w5 Fri 2022-02-04 w5
09:00 - 16:00 Getting down to business. Through Zoom (see separate schedule). 4TX030
Digital teaching
Workshop
Mandatory
Annika Hanberg, Charlotte Nilsson and others
w6 Mon 2022-02-07 w6
09:30 - 11:30 Course start and introduction. Intro to cell culture techniques. 4TX030
Atrium, http://ki.se/medarbetare/atrium
Lecture
Mandatory
Kristian Dreij, Hanna Karlsson, Penny Nymark
12:30 - 13:30 Intro to non-animal approaches in risk/safety assessment 4TX030
Atrium, http://ki.se/medarbetare/atrium
Lecture
Lars Wiklund
13:45 - 14:45 Organs-on-chip. 4TX030
Atrium, http://ki.se/medarbetare/atrium
Lecture
Anna Herland
  Tue 2022-02-08
09:15 - 11:00 Novel 3D liver in vitro systems and their applications in drug development. 4TX030
Karolina, http://ki.se/medarbetare/karolina
Lecture
Magnus Ingelman-Sundberg
11:15 - 12:15 Alternative methods and some regulatory considerations: examples from the world of medical
devices.
4TX030
Karolina, http://ki.se/medarbetare/karolina
Lecture
C. Nilsson
13:15 - 14:15 In vivo-In vitro correlations - focus on the lung. 4TX030
Karolina, http://ki.se/medarbetare/karolina
Lecture
Hanna Karlsson
14:30 - 16:00 4TX030
Distance education
Self-study
  Wed 2022-02-09
09:00 - 16:00 4TX030
Distance education
Self-study
  Thu 2022-02-10
09:00 - 10:30 Group discussions - Literature assignment 4TX030
Digital teaching
Workshop
Mandatory
10:30 - 11:30 Questions in Zoom 4TX030
Distance education
Discussion
Kristian Dreij, Lars Wiklund
11:30 - 16:00 4TX030
Distance education
Self-study
  Fri 2022-02-11
09:00 - 12:00 Presentation of literature assignments. 4TX030
211, https://medarbetare.ki.se/211
205, https://medarbetare.ki.se/205
212, https://medarbetare.ki.se/212
208, https://medarbetare.ki.se/208
Examination
Mandatory
K Dreij, H Karlsson, A Hanberg, J Zilliacus, A Beronius, C Nilsson, L Wiklund, E Törnqvist
w7 Mon 2022-02-14 w7
09:00 - 10:00 Welcome and introduction to the course
Sampling schemes, statistical inference, types of data
4TX030
Wangari, https://medarbetare.ki.se/larosal-wangari
Lecture
Ali Manouchehrinia
10:15 - 12:00 Descriptive statistics, summary measures, graphs 4TX030
Wangari, https://medarbetare.ki.se/larosal-wangari
Lecture
Ali Manouchehrinia
13:00 - 16:00 Computer lab session 4TX030
Skrivsal Enter, https://medarbetare.ki.se/enter
Workshop
Mandatory
Ali Manouchehrinia
  Tue 2022-02-15
09:00 - 10:00 Hypothesis testing, distributions 4TX030
Wangari, https://medarbetare.ki.se/larosal-wangari
Lecture
Ali Manouchehrinia
10:15 - 12:00 Simple parametric and non-parametric tests 4TX030
Wangari, https://medarbetare.ki.se/larosal-wangari
Lecture
Ali Manouchehrinia
13:00 - 16:00 Computer lab session 4TX030
Skrivsal Enter, https://medarbetare.ki.se/enter
Workshop
Mandatory
Ali Manouchehrinia
  Wed 2022-02-16
09:00 - 16:00 4TX030
Optional
Sports day
  Thu 2022-02-17
09:00 - 12:00 Questions and answers, overview of the labs 4TX030
Wangari, https://medarbetare.ki.se/larosal-wangari
Lecture
Ali Manouchehrinia
13:00 - 16:00 4TX030
Distance education
Self-study
  Fri 2022-02-18
09:00 - 12:00 4TX030
Distance education
Self-study
13:00 - 17:00 Exam in Biostatistics.
Please bring your own lap top.
4TX030
Wangari, https://medarbetare.ki.se/larosal-wangari
Ruth, https://medarbetare.ki.se/ruth
Examination
Mandatory
w8 Mon 2022-02-21 w8
09:00 - 10:30 Introduction to labs and Journal Club 1 4TX030
Wretlindsalen, https://medarbetare.ki.se/salen-wretlind
Lecture
Mandatory
Hanna Karlsson, Kristian Dreij
10:30 - 12:00 Lab safety 4TX030
Wretlindsalen, https://medarbetare.ki.se/salen-wretlind
Lecture
Mandatory
Hanna Karlsson
13:00 - 17:00 Lab week 1 (see separate schedule for details) 4TX030
Lab at IMM
Laboratory session
Mandatory
  Tue 2022-02-22
09:30 - 16:30 Lab week 1 (see separate schedule for details) 4TX030
Lab at IMM
Laboratory session
Mandatory
  Wed 2022-02-23
09:30 - 16:30 Lab week 1 (see separate schedule for details) 4TX030
Lab at IMM
Laboratory session
Mandatory
  Thu 2022-02-24
09:30 - 16:30 Lab week 1 (see separate schedule for details) 4TX030
Lab at IMM
Laboratory session
Mandatory
  Fri 2022-02-25
09:00 - 11:00 JC1 presentations and discussions, group 1 & 2. 4TX030
Gunnar Höglund, https://medarbetare.ki.se/larosal-gunnar-hoglund
Seminar
Mandatory
Hanna Karlsson, Kristian Dreij
12:00 - 14:00 JC1 presentations and discussions, group 3 & 4. 4TX030
Gunnar Höglund, https://medarbetare.ki.se/larosal-gunnar-hoglund
Seminar
Mandatory
Hanna Karlsson, Kristian Dreij
14:30 - 16:30 JC1 presentations and discussions, group 5 & 6. 4TX030
Gunnar Höglund, https://medarbetare.ki.se/larosal-gunnar-hoglund
Seminar
Mandatory
Hanna Karlsson, Kristian Dreij
w9 Mon 2022-02-28 w9
09:00 - 10:00 Comet assay 4TX030
Wretlindsalen, https://medarbetare.ki.se/salen-wretlind
Lecture
Hanna Karlsson
10:00 - 11:00 Flow cytometry 4TX030
Wretlindsalen, https://medarbetare.ki.se/salen-wretlind
Lecture
Srikanth Vallabani
13:00 - 16:30 Lab week 2 (see separate schedule for details) 4TX030
Lab at IMM
Laboratory session
  Tue 2022-03-01
09:30 - 16:30 Lab week 2 (see separate schedule for details) 4TX030
Lab at IMM
Laboratory session
Mandatory
  Wed 2022-03-02
09:30 - 16:30 Lab week 2 (see separate schedule for details) 4TX030
Lab at IMM
Laboratory session
Mandatory
  Thu 2022-03-03
09:30 - 16:30 Lab week 2 (see separate schedule for details) 4TX030
Lab at IMM
Laboratory session
Mandatory
  Fri 2022-03-04
09:30 - 16:30 Lab week 2 (see separate schedule for details) 4TX030
Lab at IMM
Laboratory session
Mandatory
w10 Mon 2022-03-07 w10
09:00 - 10:00 Western blot 4TX030
Wretlindsalen, https://medarbetare.ki.se/salen-wretlind
Lecture
Magnus Olsson
10:00 - 11:00 qPCR 4TX030
Wretlindsalen, https://medarbetare.ki.se/salen-wretlind
Lecture
Mathilde Cheray and Kathleen Grabert
13:00 - 16:30 Lab week 3 (see separate schedule for details) 4TX030
Lab at IMM
Laboratory session
Mandatory
  Tue 2022-03-08
09:30 - 16:30 Lab week 3 (see separate schedule for details) 4TX030
Lab at IMM
Laboratory session
Mandatory
  Wed 2022-03-09
09:30 - 16:30 Lab week 3 (see separate schedule for details) 4TX030
Lab at IMM
Laboratory session
Mandatory
  Thu 2022-03-10
09:30 - 16:30 Lab week 3 (see separate schedule for details) 4TX030
Lab at IMM
Laboratory session
Mandatory
  Fri 2022-03-11
09:30 - 16:30 Lab week 3 (see separate schedule for details) 4TX030
Lab at IMM
Laboratory session
w11 Mon 2022-03-14 w11
09:30 - 15:45 Demo-labs (see separate schedule for details) 4TX030
Lab at IMM
Laboratory session
Mandatory
16:00 - 16:45 4TX030
221, http://ki.se/medarbetare/221
Course council meeting Kristian Dreij
  Tue 2022-03-15
09:30 - 16:00 Demo-labs (see separate schedule for details) 4TX030
Lab at IMM
Laboratory session
Mandatory
  Wed 2022-03-16
09:30 - 16:00 Demo-labs (see separate schedule for details) 4TX030
Lab at IMM
Laboratory session
Mandatory
  Thu 2022-03-17
09:30 - 16:00 Demo-labs (see separate schedule for details) 4TX030
Lab at IMM
Laboratory session
Mandatory
  Fri 2022-03-18
09:00 - 11:00 JC2 presentations and discussions, group Alfa. 4TX030
Karolina, http://ki.se/medarbetare/karolina
Seminar
Mandatory
Kristian Dreij
Hanna Karlsson
12:00 - 14:00 JC2 presentations and discussions, group Beta. 4TX030
Karolina, http://ki.se/medarbetare/karolina
Seminar
Mandatory
Kristian Dreij
Hanna Karlsson
14:30 - 16:30 JC2 presentations and discussions, group Gamma. 4TX030
Karolina, http://ki.se/medarbetare/karolina
Seminar
Mandatory
Kristian Dreij
Hanna Karlsson
w12 Mon 2022-03-21 w12
09:00 - 11:00 Data sharing seminars, group 5 & 6. 4TX030
Wangari, https://medarbetare.ki.se/larosal-wangari
Seminar
Mandatory
Kristian Dreij
Hanna Karlsson
12:00 - 14:00 Data sharing seminars, group 3 & 4. 4TX030
Wangari, https://medarbetare.ki.se/larosal-wangari
Seminar
Mandatory
Kristian Dreij
Hanna Karlsson
14:30 - 16:30 Data sharing seminars, group 1 & 2. 4TX030
Wangari, https://medarbetare.ki.se/larosal-wangari
Seminar
Mandatory
Kristian Dreij
Hanna Karlsson
  Tue 2022-03-22
09:00 - 17:00 4TX030
Distance education
Self-study
  Wed 2022-03-23
09:00 - 09:45 Intro to ZF as experimental model in toxicology research. 4TX030
Wangari, https://medarbetare.ki.se/larosal-wangari
Workshop
Mandatory
Emma Wincent
10:00 - 16:00 Zebrafish workshop: Lab and literature assignment.
Groups 1- 6 self studies.
Groups 7-12 IMM lab.
For details see separate schedule
4TX030
Lab at IMM
Workshop
Mandatory
Emma Wincent
  Thu 2022-03-24
09:00 - 17:00 Zebrafish workshop: Lab and literature assignment.
Groups 1- 6 IMM lab.
Groups 7-12 self studies.
For details see separate schedule
4TX030
Lab at IMM
Workshop
Mandatory
Emma Wincent
  Fri 2022-03-25
09:15 - 10:15 Use of zebrafish in anti-inflammatory drug discovery 4TX030
Karolina, http://ki.se/medarbetare/karolina
Seminar
Mandatory
Rodrigo Disner
10:30 - 11:30 Studies on receptor-mediated toxicity and developmental toxicity using zebrafish embryo as model 4TX030
Karolina, http://ki.se/medarbetare/karolina
Seminar
Mandatory
Emma Wincent
12:30 - 13:30 Zebrafish as a model for genetic- and mixture toxicology 4TX030
Karolina, http://ki.se/medarbetare/karolina
Seminar
Mandatory
Kristian Dreij
13:45 - 14:45 DNT assessment in zebrafish larvae – exposure to
functional assessment in 5 days
4TX030
Karolina, http://ki.se/medarbetare/karolina
Seminar
Mandatory
Stefan Spulber
15:00 - 16:00 Zebrafish toolbox for nanotoxicology and nanomedicine
research
4TX030
Karolina, http://ki.se/medarbetare/karolina
Workshop
Mandatory
Guotao Peng
w13 Mon 2022-03-28 w13
09:00 - 12:00 Writing a discussion. 4TX030
Digital teaching
Workshop
Mandatory
Anna Borgström
13:30 - 14:30 How to choose the best references for your lab report. 4TX030
Digital teaching
Lecture
Kristian Dreij
14:45 - 17:00 4TX030
Distance education
Self-study
  Tue 2022-03-29
09:00 - 15:00 Peer review of lab reports. 4TX030
Digital teaching
Workshop
Mandatory
Anna Borgström
15:00 - 17:00 4TX030
Distance education
Self-study
  Wed 2022-03-30
09:00 - 17:00 4TX030
Distance education
Self-study
  Thu 2022-03-31
09:00 - 17:00 4TX030
Distance education
Self-study
  Fri 2022-04-01
09:00 - 16:00 Presentation of lab reports. 4TX030
218, https://medarbetare.ki.se/218
Seminar
Mandatory
Kristian Dreij
Hanna Karlsson
w14 Mon 2022-04-04 w14
09:00 - 10:00 Overview and introduction to transcriptomics and bioinformatics in toxicology.
Welcome, overview, general principles.
4TX030
Gunnar Höglund, https://medarbetare.ki.se/larosal-gunnar-hoglund
Lecture Penny Nymark
10:00 - 11:00 Transcriptomics 4TX030
Gunnar Höglund, https://medarbetare.ki.se/larosal-gunnar-hoglund
Lecture
Anda Gliga
11:00 - 12:00 Introduction to Chipster and a data set to be used in group work 4TX030
Gunnar Höglund, https://medarbetare.ki.se/larosal-gunnar-hoglund
Lecture
Penny Nymark
13:00 - 14:00 Group work 1: Bioinformatics analysis of a transcriptomics data set with Chipster. Teachers available 4TX030
Skrivsal Enter, https://medarbetare.ki.se/enter
Group work
Mandatory
Penny Nymark, Anda Gliga, Pekka Kohonen
14:00 - 15:00 Group work 1: Bioinformatics 4TX030
Skrivsal Enter, https://medarbetare.ki.se/enter
Group work
Mandatory
Teachers available (PK+PN+AG)
15:00 - 16:00 Group work 1: Bioinformatics 4TX030
Skrivsal Enter, https://medarbetare.ki.se/enter
Group work
Mandatory
  Tue 2022-04-05
09:00 - 12:00 Group work 1: Bioinformatics 4TX030
Skrivsal Enter, https://medarbetare.ki.se/enter
Group work
Mandatory
13:00 - 14:00 Group work 1: Bioinformatics 4TX030
Skrivsal Enter, https://medarbetare.ki.se/enter
Group work
Mandatory
Teachers available (PN+PK+AG)
14:00 - 15:00 Group work 1: Bioinformatics 4TX030
Skrivsal Enter, https://medarbetare.ki.se/enter
Group work
Mandatory
15:00 - 16:00 Group work 1: Bioinformatics 4TX030
Skrivsal Enter, https://medarbetare.ki.se/enter
Group work
Mandatory
  Wed 2022-04-06
09:00 - 10:00 Standardization of bioinformatics analysis workflows for omics-based risk assessment 4TX030
Gunnar Höglund, https://medarbetare.ki.se/larosal-gunnar-hoglund
Lecture
Pekka Kohonen
10:00 - 11:00 Dose-response modelling – BMDs from ‘omics data 4TX030
Gunnar Höglund, https://medarbetare.ki.se/larosal-gunnar-hoglund
Lecture
Pekka Kohonen
11:00 - 12:00 Introduction to BMDExpress 2.0 4TX030
Gunnar Höglund, https://medarbetare.ki.se/larosal-gunnar-hoglund
Lecture
Pekka Kohonen
13:00 - 14:00 Group work 2: Dose-response modelling from omics data with BMDExpress 4TX030
Skrivsal Enter, https://medarbetare.ki.se/enter
Group work
Mandatory
Teachers available (PK+AG)
14:00 - 15:00 Group work 2: Dose-response from omics 4TX030
Skrivsal Enter, https://medarbetare.ki.se/enter
Group work
Mandatory
15:00 - 16:00 Group work 2: Dose-response from omics 4TX030
Skrivsal Enter, https://medarbetare.ki.se/enter
Group work
Mandatory
  Thu 2022-04-07
09:00 - 10:00 Systems toxicology.
Group work 2: Dose-reponse from omics
4TX030
Skrivsal Enter, https://medarbetare.ki.se/enter
Group work
Mandatory
10:00 - 11:00 Group work 2: Dose-reponse from omics 4TX030
Skrivsal Enter, https://medarbetare.ki.se/enter
Group work
Mandatory
Teachers available (PK+AG)
11:00 - 12:00 Group work 2: Dose-reponse from omics 4TX030
Skrivsal Enter, https://medarbetare.ki.se/enter
Group work
Mandatory
Teachers available (PK+AG)
13:00 - 14:00 Systems Toxicology and toxicogenomics 4TX030
Gunnar Höglund, https://medarbetare.ki.se/larosal-gunnar-hoglund
Lecture
Penny Nymark
14:00 - 15:00 Proteomics 4TX030
Gunnar Höglund, https://medarbetare.ki.se/larosal-gunnar-hoglund
Lecture
Mattias Vesterlund
15:00 - 16:00 Useful databases & online tools 4TX030
Gunnar Höglund, https://medarbetare.ki.se/larosal-gunnar-hoglund
Lecture
Pekka Kohonen
  Fri 2022-04-08
09:00 - 12:00 Student presentations based on group work 4TX030
Gunnar Höglund, https://medarbetare.ki.se/larosal-gunnar-hoglund
Seminar
Mandatory
Penny Nymark, Pekka Kohonen
13:00 - 16:00 Student presentations based on group work 4TX030
Gunnar Höglund, https://medarbetare.ki.se/larosal-gunnar-hoglund
Seminar
Mandatory
Penny Nymark, Pekka Kohonen
w15 Mon 2022-04-11 w15
09:00 - 16:00 Easter break/Self studies 4TX030
Distance education
Self-study
  Tue 2022-04-12
09:00 - 16:00 Easter break/Self studies 4TX030
Distance education
Self-study
  Wed 2022-04-13
09:00 - 16:00 Easter break/Self studies 4TX030
Distance education
Self-study
  Thu 2022-04-14
09:00 - 16:00 Easter break/Self studies 4TX030
Distance education
Self-study
12:00 - 00:00 Skärtorsdag
  Fri 2022-04-15
00:00 - 00:00 Långfredag
09:00 - 16:00 Easter break/Self studies 4TX030
Distance education
Self-study
  Sat 2022-04-16
00:00 - 00:00 Påskafton
  Sun 2022-04-17
00:00 - 00:00 Påskdagen
w16 Mon 2022-04-18 w16
00:00 - 00:00 Annandag påsk
09:00 - 16:00 Self studies and deadline for lab report 4TX030
Distance education
Self-study
  Tue 2022-04-19
09:00 - 13:00 Written examination 4TX030
307, https://staff.ki.se/307
Karolina, http://ki.se/medarbetare/karolina
Examination
Mandatory